PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4_p19
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 192aa    MW: 20701 Da    PI: 6.7824
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4_p19genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19553153
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
              ++++GVr+++ +g+WvAeIr+p        +r++lg+f taeeAa+a+++a+  +
  RrC4_p19  5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRIWLGTFETAEEAARAYDEAAVLM 53
              59*******9.**********8.....334*********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.69E-33563No hitNo description
PROSITE profilePS5103222.155663IPR001471AP2/ERF domain
SMARTSM003801.4E-40669IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-21665IPR016177DNA-binding domain
PfamPF008471.5E-12650IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-33664IPR001471AP2/ERF domain
PRINTSPR003671.2E-10718IPR001471AP2/ERF domain
PRINTSPR003671.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT  60
NFPLNNNNNT GDTSEGKTDI SSSSSSLSSI LSAKLRKCCK SPSPSLTCLR LDTASSHIGV  120
WQKRAGSKSD SSWVMTVELG PSGSTQEPTK NASQDDVGPA TEVGGGGGGE EGAMDEEEKA  180
ALQMIEELLN TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-18568468ATERF1
3gcc_A9e-18568468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1666231e-109DQ166623.1 Brassica juncea AP2 transcription factor (SHN1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416915.11e-112hypothetical protein EUTSA_v10008845mg
SwissprotQ9XI331e-108WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLV4L6851e-112V4L685_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.1__1687__AT1G15360.11e-107(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-81ERF family protein